Table of Contents - WWWtacg Analysis
by Harry Mangalam
» For the pasted-in sequence labelled: F32G8.6 genomic
»Using the server-side Pattern database rebase.data (Click it to Download.)
NB: the order of the TOC entries does not always match the order in which they appear in the output.
BplI BsaBI BsrBI BstZ17I EciI Eco47III EcoRV
FspI HgiEII HpaI MscI Pfl1108I PmeI PmlI
PshAI PvuII ScaI SmaI SmiI SnaBI SrfI
StuI UbaEI XmnI
BsaXI 1 DraI 2 SspI 3
BsbI 2 DrdII 2 UbaDI 1
BspGI 1 NruI 1
*Maximum* Hits: 50
BsaXI ACnnnnnCTCC (0 Err) - 1 Cut(s)
1195
BspGI CTGGAC (0 Err) - 1 Cut(s)
6
NruI TCG'CGA (0 Err) - 1 Cut(s)
1311
UbaDI GAACnnnnnnTCC (0 Err) - 1 Cut(s)
483
BsbI CAACAC (0 Err) - 2 Cut(s)
53 321
DraI TTT'AAA (0 Err) - 2 Cut(s)
219 540
DrdII GAACCA (0 Err) - 2 Cut(s)
186 1169
SspI AAT'ATT (0 Err) - 3 Cut(s)
390 400 1123
BspGI BsbI
\ \
1 atgtccagaattgagaacgaaagcggatttttgtcatctgacgccgcaagtgttggatcc 60
tacaggtcttaactcttgctttcgcctaaaaacagtagactgcggcgttcacaacctagg
^ * ^ * ^ * ^ * ^ * ^ *
1 M S R I E N E S G F L S S D A A S V G S
2 C P E L R T K A D F C H L T P Q V L D P
3 V Q N * E R K R I F V I * R R K C W I R
61 gaagacgataaagttgagatgaagaaaagaaacggaacgattccaaaggaagatcatttg 120
cttctgctatttcaactctacttcttttctttgccttgctaaggtttccttctagtaaac
^ * ^ * ^ * ^ * ^ * ^ *
1 E D D K V E M K K R N G T I P K E D H L
2 K T I K L R * R K E T E R F Q R K I I *
3 R R * S * D E E K K R N D S K G R S F E
121 aaatcaatgtgcaatgcctatcagagcatcattcaacatgtcggtgagttcatgtgattc 180
tttagttacacgttacggatagtctcgtagtaagttgtacagccactcaagtacactaag
^ * ^ * ^ * ^ * ^ * ^ *
1 K S M C N A Y Q S I I Q H V G E F M * F
2 N Q C A M P I R A S F N M S V S S C D S
3 I N V Q C L S E H H S T C R * V H V I L
DrdII DraI
\ \
181 tttggttcggaaagtattagtcgatcaacaacaaatttaaaataagctgtttaagaatag 240
aaaccaagcctttcataatcagctagttgttgtttaaattttattcgacaaattcttatc
^ * ^ * ^ * ^ * ^ * ^ *
1 F G S E S I S R S T T N L K * A V * E *
2 L V R K V L V D Q Q Q I * N K L F K N R
3 W F G K Y * S I N N K F K I S C L R I D
241 attatagagttctgaaaacgtactgtcaactgtttacgtcagcagaattaggaaaacttt 300
taatatctcaagacttttgcatgacagttgacaaatgcagtcgtcttaatccttttgaaa
^ * ^ * ^ * ^ * ^ * ^ *
1 I I E F * K R T V N C L R Q Q N * E N F
2 L * S S E N V L S T V Y V S R I R K T L
3 Y R V L K T Y C Q L F T S A E L G K L W
BsbI
\
301 ggtttcgataaacatttcaacacactttttgattcattctagagattataatgttttagc 360
ccaaagctatttgtaaagttgtgtgaaaaactaagtaagatctctaatattacaaaatcg
^ * ^ * ^ * ^ * ^ * ^ *
1 G F D K H F N T L F D S F * R L * C F S
2 V S I N I S T H F L I H S R D Y N V L A
3 F R * T F Q H T F * F I L E I I M F * H
SspI SspI
\ \
361 atttattcattatcagtgactcaaagaatattgataaatattttcccaaatataaatttg 420
taaataagtaatagtcactgagtttcttataactatttataaaagggtttatatttaaac
^ * ^ * ^ * ^ * ^ * ^ *
1 I Y S L S V T Q R I L I N I F P N I N L
2 F I H Y Q * L K E Y * * I F S Q I * I *
3 L F I I S D S K N I D K Y F P K Y K F D
421 accaagatgttttgaaagtcgatgatctataactgatagttgttattgtctggaaggaag 480
tggttctacaaaactttcagctactagatattgactatcaacaataacagaccttccttc
^ * ^ * ^ * ^ * ^ * ^ *
1 T K M F * K S M I Y N * * L L L S G R K
2 P R C F E S R * S I T D S C Y C L E G S
3 Q D V L K V D D L * L I V V I V W K E V
UbaDI DraI
\ \
481 ttcagttcaatatattccactctcaaatcaaaaatcaagatcgaaaattgttttaattta 540
aagtcaagttatataaggtgagagtttagtttttagttctagcttttaacaaaattaaat
^ * ^ * ^ * ^ * ^ * ^ *
1 F S S I Y S T L K S K I K I E N C F N L
2 S V Q Y I P L S N Q K S R S K I V L I *
3 Q F N I F H S Q I K N Q D R K L F * F K
541 aagactcatgacaaattgtaatctattacatcacgcaatcaaggtaccctagcacatcat 600
ttctgagtactgtttaacattagataatgtagtgcgttagttccatgggatcgtgtagta
^ * ^ * ^ * ^ * ^ * ^ *
1 K T H D K L * S I T S R N Q G T L A H H
2 R L M T N C N L L H H A I K V P * H I I
3 D S * Q I V I Y Y I T Q S R Y P S T S S
601 caggaacttgtgatttcaattgatatatctataacataaatcagaaaaaaataggttgtg 660
gtccttgaacactaaagttaactatatagatattgtatttagtctttttttatccaacac
^ * ^ * ^ * ^ * ^ * ^ *
1 Q E L V I S I D I S I T * I R K K * V V
2 R N L * F Q L I Y L * H K S E K N R L C
3 G T C D F N * Y I Y N I N Q K K I G C V
661 tccgttgattataagggaaaaaatgaaaacaaaatacattttcccacgttgactgatttt 720
aggcaactaatattcccttttttacttttgttttatgtaaaagggtgcaactgactaaaa
^ * ^ * ^ * ^ * ^ * ^ *
1 S V D Y K G K N E N K I H F P T L T D F
2 P L I I R E K M K T K Y I F P R * L I L
3 R * L * G K K * K Q N T F S H V D * F W
721 gggaattcaggagaagacatcaatcgtcagggacttctgaaaactccagaacgtgctgcc 780
cccttaagtcctcttctgtagttagcagtccctgaagacttttgaggtcttgcacgacgg
^ * ^ * ^ * ^ * ^ * ^ *
1 G N S G E D I N R Q G L L K T P E R A A
2 G I Q E K T S I V R D F * K L Q N V L P
3 E F R R R H Q S S G T S E N S R T C C Q
781 aaagcaatgatggcattcacaaagggatacgatgatcaacttgatggtcagttatagcaa 840
tttcgttactaccgtaagtgtttccctatgctactagttgaactaccagtcaatatcgtt
^ * ^ * ^ * ^ * ^ * ^ *
1 K A M M A F T K G Y D D Q L D G Q L * Q
2 K Q * W H S Q R D T M I N L M V S Y S N
3 S N D G I H K G I R * S T * W S V I A I
841 tacaacgttaaagctcaaagtttcatttttcagagctcctcaacgaggcagtattcgacg 900
atgttgcaatttcgagtttcaaagtaaaaagtctcgaggagttgctccgtcataagctgc
^ * ^ * ^ * ^ * ^ * ^ *
1 Y N V K A Q S F I F Q S S S T R Q Y S T
2 T T L K L K V S F F R A P Q R G S I R R
3 Q R * S S K F H F S E L L N E A V F D E
901 aggatcacgatgagatggttattgtgaaagatattgaaatgttctccctttgtgagcatc 960
tcctagtgctactctaccaataacactttctataactttacaagagggaaacactcgtag
^ * ^ * ^ * ^ * ^ * ^ *
1 R I T M R W L L * K I L K C S P F V S I
2 G S R * D G Y C E R Y * N V L P L * A S
3 D H D E M V I V K D I E M F S L C E H H
961 atttagttccatttatgggaaaagttcatattggatacattccaaacaagaaggttcttg 1020
taaatcaaggtaaatacccttttcaagtataacctatgtaaggtttgttcttccaagaac
^ * ^ * ^ * ^ * ^ * ^ *
1 I * F H L W E K F I L D T F Q T R R F L
2 F S S I Y G K S S Y W I H S K Q E G S W
3 L V P F M G K V H I G Y I P N K K V L G
1021 gtctgtccaagttggcaagaatagtcgagatgttcagcagaagacttcaaggtaaattga 1080
cagacaggttcaaccgttcttatcagctctacaagtcgtcttctgaagttccatttaact
^ * ^ * ^ * ^ * ^ * ^ *
1 V C P S W Q E * S R C S A E D F K V N *
2 S V Q V G K N S R D V Q Q K T S R * I E
3 L S K L A R I V E M F S R R L Q G K L R
SspI
\
1081 gaaattacatttttgattggaacctaacctaaacgttcaaatatttcagtccaagaacgt 1140
ctttaatgtaaaaactaaccttggattggatttgcaagtttataaagtcaggttcttgca
^ * ^ * ^ * ^ * ^ * ^ *
1 E I T F L I G T * P K R S N I S V Q E R
2 K L H F * L E P N L N V Q I F Q S K N V
3 N Y I F D W N L T * T F K Y F S P R T S
DrdII BsaXI
\ \
1141 cttacaaagcaaattgccaccgcaatggttcaagctgtacaaccatccggagttgcagtt 1200
gaatgtttcgtttaacggtggcgttaccaagttcgacatgttggtaggcctcaacgtcaa
^ * ^ * ^ * ^ * ^ * ^ *
1 L T K Q I A T A M V Q A V Q P S G V A V
2 L Q S K L P P Q W F K L Y N H P E L Q L
3 Y K A N C H R N G S S C T T I R S C S C
1201 gttattgaagctagtcacatgtgtatggtaatgagaggagttcaaaagatcaatgcttcc 1260
caataacttcgatcagtgtacacataccattactctcctcaagttttctagttacgaagg
^ * ^ * ^ * ^ * ^ * ^ *
1 V I E A S H M C M V M R G V Q K I N A S
2 L L K L V T C V W * * E E F K R S M L P
3 Y * S * S H V Y G N E R S S K D Q C F H
NruI
\
1261 accacaacatcctgcatgttgggagtattccgtgacgatccaaagactcgcgaagaattc 1320
tggtgttgtaggacgtacaaccctcataaggcactgctaggtttctgagcgcttcttaag
^ * ^ * ^ * ^ * ^ * ^ *
1 T T T S C M L G V F R D D P K T R E E F
2 P Q H P A C W E Y S V T I Q R L A K N S
3 H N I L H V G S I P * R S K D S R R I P
1321 cttaatcttatcaacaaacgctaa 1380
gaattagaatagttgtttgcgatt
^ * ^ * ^ * ^ * ^ * ^ *
1 L N L I N K R *
2 L I L S T N A K
3 * S Y Q Q T L N
==-------------------------- End of Analysis --------------------------==