Sequence Analysis - Biology 382
BIO 382 NAVIGATION BAR ->
HOME
SYLLABUS
ANNOUNCEMENTS
Q & A
LINKS
SEQUENCE ANALYSIS

Biology 382 - Molecular Biology

Computer-based Genomic Sequence Analysis / Bioinformatics

Directory of C. remanei genomic sequences - Cr_seq - find your assigned genomic sequences.

Links for Cloning Strategy Lab

Basic Cloning Strategies illustrations

Reporter Fusion Cloning Strategies illustrations

FGENESH - gene prediction program, in case you still need it.

WWWtacg - the web-based version of the restriction analysis program 'tacg' by Harry Mangalam (thanks, Harry!)
Use site from the top row if available: WWWtacg v4.3 - Univ Mass Medical School WWWtacg v3 - Univ of Victoria, BC
Use bottom row sites if others aren't working: WWWtacg v4.1 - UC Irvine WWWtacg v4.1 - Cal State Fullerton

Restriction Site File for Analyses - ~RE2128MCS_Comp - Download to your local computer

Examples of Cloning Strategy Reports

These are both acceptable forms; essentially the same information is conveyed:

cb089c8.1_gene5 Strategy

F32G8.6 Strategy

Location of blunt sites in F32G8.6 genomic sequence

Extra credit "pretty" versions of genes:

cb089c8.1_gene5

F32G8.6

© 2013 Curtis Loer, Dept of Biology, USD. All rights reserved. Simple, hand-coded pages.