Include within your ELN the full PDF results from FGENESH (C. elegans version) [Example], and from the BLASTX analysis, the screenshot of the 'Graphic Summary' [Example] as noted in the instructions.
Include the summary information below, and then create a simple table of your results, titled and with any appropriate notes as shown below:
FGENESH analysis results for Omy_Node_15a.seq (O. myriophila genomic DNA) - Predicted Genes, Organism setting C. elegans:
Omy_NODE_15a Gene prediction using FGENESH 2.6
Number of predicted genes 11: in +chain 4, in -chain 7.
Number of predicted exons 49: in +chain 21, in -chain 28.
Gene density (ab intio analysis): average ~1 gene / 4530 bp DNA (length of analyzed sequence: 49820)
| Gene | Strand | Exons (n) | Protein length (AAs) | BLASTX match? | BLASTP match? |
| 1 | + | 9 | 379 | yes | yes |
| 2 | + | 13 | 465 | yes | yes |
| 3 | - | 2 | 48 | no | no |
| 4 | + | 6 | 798 | yes | yes |
| 5 | - | 1 | 37 | no | no |
| 6 | etc. | ||||
| * | - | 2 | 45? | yes | not done |
*Notes: One possible gene found by BLASTX was not detected by FGENESH, between predicted genes 4 & 5.
Predicted Genes, Organism setting Pristionchus pacificus:
Omy_NODE_15a Gene prediction using FGENESH 2.6
Number of predicted genes 10: in +chain 4, in -chain 6.
Number of predicted exons 40: in +chain 17, in -chain 23.