Bioinformatics Week 1 'Work Products'

Please note that all items turned in should be properly formatted. For example, sequence information must be properly aligned to be readable. This may involve converting to a 'mono-spaced' font such as Courier, changing the font size and/or the margins of the document to eliminate disrupting line breaks. Check that your materials are attractive and interpretable as submitted.
  1. Manual translation (photo of paper translation) - be sure to translate all codons, identify stop codons and the ORF.
  2. Your DNA Pol I / polA gene nucleotide sequence in FASTA format. [Exercise 2]
  3. Translated sequence in 'with nucleotide seq' format - only the correct reading frame, with highlighted stop and start codons. [Exercise 3]
  4. Human protein-of-interest sequence variant analysis with your MSA. [Exercise 4 - see details for this part at the bottom of that section.]
  5. Screenshots of protein-of-interest viewed in iCN3D, showing AA sequence window with AA selected and AA visible in the protein structure, for each of your variants. [Exercise 5]