Show picture of predicted genes in PDF file
 FGENESH 2.4 Prediction of potential genes in C_elegans genomic DNA
 Time    :   Sun Apr  9 09:27:13 2006
 Seq name: gi|58825780|gb|AAGD01000013.1| Caenorhabditis remanei strain PB4641 Cont0.13,  
 Length of sequence: 45823 
 Number of predicted genes 10 in +chain 4 in -chain 6
 Number of predicted exons 56 in +chain 23 in -chain 33
 Positions of predicted genes and exons: Variant   1 from   1, Score:536.877808 
   G Str   Feature   Start        End    Score           ORF           Len

   1 +    1 CDSf       346 -       446    1.34       346 -       444     99
   1 +    2 CDSi      1799 -      2053    9.81      1800 -      2051    252
   1 +    3 CDSi      4947 -      5022    3.89      4948 -      5022     75
   1 +    4 CDSi      5070 -      5156   10.75      5070 -      5156     87
   1 +    5 CDSi      5256 -      5372    5.85      5256 -      5372    117
   1 +    6 CDSi      5418 -      5483    5.64      5418 -      5483     66
   1 +    7 CDSi      5533 -      5781   21.63      5533 -      5781    249
   1 +    8 CDSi      5975 -      6142   25.70      5975 -      6142    168
   1 +    9 CDSi      6188 -      6385   10.20      6188 -      6385    198
   1 +   10 CDSi      6437 -      6627   13.97      6437 -      6625    189
   1 +   11 CDSl      7017 -      7053    0.83      7018 -      7053     36
   1 +      PolA      7193                1.06

   2 +      TSS      10846               -9.56
   2 +    1 CDSf     11417 -     11516   11.17     11417 -     11515     99
   2 +    2 CDSi     11605 -     11708    5.81     11607 -     11708    102
   2 +    3 CDSi     11752 -     11973    0.69     11752 -     11973    222
   2 +    4 CDSi     12023 -     12155   18.14     12023 -     12154    132
   2 +    5 CDSl     12216 -     12343   -3.63     12218 -     12343    126
   2 +      PolA     12843                1.06

   3 -      PolA     14556                1.06
   3 -    1 CDSl     14567 -     14626    4.15     14567 -     14626     60
   3 -    2 CDSf     15844 -     15984   11.56     15844 -     15984    141
   3 -      TSS      15993               -9.66

   4 +      TSS      16052               -8.96
   4 +    1 CDSf     16361 -     16499   14.70     16361 -     16498    138
   4 +    2 CDSi     16559 -     16656   12.19     16561 -     16656     96
   4 +    3 CDSi     16707 -     16928   12.94     16707 -     16928    222
   4 +    4 CDSi     16977 -     17094   10.33     16977 -     17093    117
   4 +    5 CDSl     17145 -     17305   15.49     17147 -     17305    159
   4 +      PolA     17423                1.06

   5 -      PolA     17825                1.06
   5 -    1 CDSl     17835 -     17852   -4.98     17835 -     17852     18
   5 -    2 CDSi     17980 -     18050    1.89     17980 -     18048     69
   5 -    3 CDSi     18806 -     18880   11.97     18807 -     18878     72
   5 -    4 CDSf     19060 -     19096    8.65     19061 -     19096     36
   5 -      TSS      19235              -13.06

   6 -      PolA     19725                1.06
   6 -    1 CDSl     20073 -     20125    1.74     20073 -     20123     51
   6 -    2 CDSi     20330 -     20575   20.99     20331 -     20573    243
   6 -    3 CDSi     20629 -     20744    0.70     20630 -     20743    114
   6 -    4 CDSi     20798 -     20927    6.13     20800 -     20925    126
   6 -    5 CDSi     21028 -     21576   31.59     21029 -     21574    546
   6 -    6 CDSi     21755 -     21835    2.54     21756 -     21833     78
   6 -    7 CDSi     22021 -     22115    3.17     22022 -     22114     93
   6 -    8 CDSi     23321 -     23467   13.37     23323 -     23466    144
   6 -    9 CDSi     23520 -     23636    5.74     23522 -     23635    114
   6 -   10 CDSi     23689 -     24323   50.50     23691 -     24323    633
   6 -   11 CDSf     24813 -     24971    4.33     24813 -     24971    159
   6 -      TSS      25139               -5.66

   7 -      PolA     26101                1.06
   7 -    1 CDSl     26338 -     26612    7.56     26338 -     26610    273
   7 -    2 CDSi     26661 -     26747    4.91     26662 -     26745     84
   7 -    3 CDSi     27481 -     27573    9.11     27482 -     27571     90
   7 -    4 CDSi     27619 -     27705   11.45     27620 -     27703     84
   7 -    5 CDSi     27758 -     27838    7.73     27759 -     27836     78
   7 -    6 CDSi     27925 -     27999    4.54     27926 -     27997     72
   7 -    7 CDSi     28211 -     28330   10.77     28212 -     28328    117
   7 -    8 CDSi     28549 -     28656    7.35     28550 -     28654    105
   7 -    9 CDSi     28746 -     28956   18.58     28747 -     28956    210
   7 -   10 CDSf     29000 -     29011   -2.13     29000 -     29011     12
   7 -      TSS      29344               -9.16

   8 -      PolA     31472                1.06
   8 -    1 CDSl     31890 -     32382   35.19     31890 -     32381    492
   8 -    2 CDSi     32568 -     32766   25.87     32570 -     32764    195
   8 -    3 CDSf     32959 -     33115   12.51     32960 -     33115    156
   8 -      TSS      35507               -3.86

   9 +      TSS      38576               -7.56
   9 +    1 CDSf     39760 -     40094   12.74     39760 -     40092    333
   9 +    2 CDSl     40168 -     40282   -0.16     40169 -     40282    114
   9 +      PolA     40861                1.06

  10 -      PolA     41751                1.06
  10 -    1 CDSl     41805 -     42091   25.05     41805 -     42089    285
  10 -    2 CDSi     42151 -     42419   22.13     42152 -     42418    267
  10 -    3 CDSf     42510 -     43027   63.97     42512 -     43027    516
  10 -      TSS      43526               -6.46

Predicted protein(s):
>FGENESH:   1  11 exon (s)    346  -   7053   514 aa, chain +
MFSKLQLEGALFEQSGTTLLVLLWRGDVVQFGVCLQKEFNFGFDSGSQTFDAKTASAPQL
VDVDFVSDLLKGGLQCNARVVGDSRDLPLQILPYEEIHHYEIRRRRRPNVVASVASNESL
SPTVFKNMAPTGNEIFTKKQWPHKISIGICAMQRKATSKPMQAIMEKLIVFFGHLVNFFI
FPEQVILKEPIENWPHCHCLISIHSTEFPLQKAIAYVKLQNPYVINNLDRQFDMLDRRTV
LRILSENGIEHPRHGCVTRGESNEPDTEFVEHPDHIEINGEVFKKPFVEKPINAEDHNVY
IYYPSSVGGGSRRLFRKKNNQSSCYYPKSEVRREGSYIYEEFIPADGTDVKVYAVGPSYA
HAEARKAPGVDGQVERDSDGKEVRYPVILSDEEKQIAKKIVLAFGQTICGFDLLRADGKS
YVCDVNGFSFVKTSEKYYEDTANILGNQIVRHFAKTNGWQIPTDMPQPPILDSGLGDDTP
TITTSSGTSAELSCIVEKQSESREVDQVSGENGH
>FGENESH:   2   5 exon (s)  11417  -  12343   228 aa, chain +
MPFDSSSRPSQKVISFRRHSAPSSLKNGYRMNQEEPRISQRERRRIETMSGVQLLKYVAL
ELGFPEFEKIMPSVEYVFERLCYTQQIGVPNPRNSYFFHFATMYIKSRQPLLMPWEEDLK
LFKSTAFVKNNHEEWKKTHPQPILIDMMPNDPEKKKKEKKSTKRAISSDSETDGLTEIKS
NSASPTDNLEFKRQCIMNKLKNVRETHLNKRTPSNLHQVLQQFKSKMY
>FGENESH:   3   2 exon (s)  14567  -  15984    66 aa, chain -
MYEFVNVMQLDGSDERITNVIHFISASSQMRRKQGKKAEEISVSGYKVFKKIEIKGRSVD
EGVLEK
>FGENESH:   4   5 exon (s)  16361  -  17305   245 aa, chain +
MMSNRTPSLDEKRQNDYKEKLSRKVSTFMEFSEDDPEVDDVIRMIRRNLPLSDPLPQALY
NKLHSMEGNALLKIAVLEKEISPYVEYFCALKCTYHKVPEPTNGTTSFGSFATYYLDCIT
RTPTDWENKLRTLKATLNTKSSAEYRERTLSKTKVCTIPVKQSTTEMKRNPQLAAVAAQT
LGVQIVGAPVLSDTPKNPVTPKQTGSKVPKVKKDPKQPAKPKPKKRAPMMAKCLKMCRPR
AFLLE
>FGENESH:   5   4 exon (s)  17835  -  19096    66 aa, chain -
MVPETVKCGEKRESEKSEENGSESDFPVVLPHPSPEYGILSFEENDSSHLSPKIRRSSTP
CLSSHQ
>FGENESH:   6  11 exon (s)  20073  -  24971   775 aa, chain -
MGGADGAPNTSLAVTTNDRLYWRHTPIVSQCPNGVPNPVVVIQKEFLTETPRPHISKSQF
VRKIFEHDWNHLVEVSIPGYEFYGLKEYVKAYPKQLDTFNFEFLIHGGKLLATRRMYVDR
VTGARFSTGPVFKNCNIDVSMFSGLLKLAWSEMNKVGKNEEKEPNGFEIFGESEKASGLS
NMTISKPVGIEMSVNKPGGYSPMNSEFPGLEEGEADKAPKVDSVGNQQQSLKNYRTNQGC
YKNFNNRQFNLWTQHYKQFVPHFRKFGQHHYNLNNQIDRVLQDDAGSFRKGNRRSFKKDD
GAGMPSQSTITYQSILHVEVPLAPTRTLESTVVSREGVYNNFQTTHGYRQWKRYTRTLFR
EKGMNQNSMIHDPSLRQYQLERSRELEIFHKLSAIRRQHGFPVELPRFNEYGNIVNMPAN
VFSQPPPFLPQPIQQPVYPQPRYQIWGLFDEISEKNVSNFNLDNCNSWSVGFPLSATNNS
PTTDQQIYELLQQNPTLPLNASPSKVIFVYDVPPGHYVIQDSQLRSCYIRNKFQNQNQNQ
PVTHLSNKRVVRIDRETQTESGEAEHAKGVADNREILHKAIRESATKAPTITSNLSEPDK
DEIHSAVCKVNNWFQMTEEIVSNGSRSRSEEPLSDERSITPNPTDNLPMEHQTSQQPHQL
HGSQSSGNFKKPAVRIVRHSVVESKNEAKEAKEADVVGDGDDNETGRTATKRDSEKGDDT
NNVSLVGELSVAEKCSESDATETDINTHSHDDVNESQEGASIPKEPNHPEGKSSD
>FGENESH:   7  10 exon (s)  26338  -  29011   382 aa, chain -
MQDSTPRTVKAAQRKTLNDDWLKRVLRNRLSQLSAQELCSVDRPSSSSVSPATSASSSSG
EASPVLEDMSNAVESSVASKPSEDVTSGKPRSSKEALEPEEPSNDGHGTGGSVGKASEDE
DAEKPGSSQSTEELSNDGQEELFNDGQATEVIEPAPPAINLETVRYATVSSETNGAADKE
SVVVQAAEEMGQFASSSNVAPVDARPTPPAESAQPVHNEVVDVIEGPAEVIEYHDGPKTR
SRSRMEAARLERNQVSSAPQGNNYEGRQEQDPPEPIQEPARYQVVLGDVTRYFAESGRRI
LEEGWKSFNLPSHILNQDELLEERLEEIQEEDDGPQPDAEQYQKSQPELRRSQRKRRKRT
LSLPLEEPKRPRENCEFFQFIF
>FGENESH:   8   3 exon (s)  31890  -  33115   282 aa, chain -
MPVLLLLMVFCIGSTNSLPRPTGAEFLKNLSFEFKVNEIADFSPQLEDLLRNAEYYHKNL
SVIQSCDQPVEFDFGRCNKTFFRHKHGDTNLTLYFDEQGILFLKNTLESPCFEQDASKDY
LNEYFTLMKTPIENWYYYQRAHSPPELLSSRFSSTTFIIMGIFVGAVVLCFFSMLIGKCL
TSDGLGEDEKDADVHELENLDEPAHHSIGFIDEDVVTRDVEPAEPVYSFPYVLPTEPVYS
YPYQNYPRPALPNGYRLIQNCQSTDGSCDCDESGNGIIVTRF
>FGENESH:   9   2 exon (s)  39760  -  40282   149 aa, chain +
MSSEPLPISKLPTDFSELHKQEMARREKEEQENNKWVFEKPTAEENQKPAEPRRLSPEEI
ALWESLGDSNDEDEEEERIDKESLKRKCRNHINNRLQILKEGTEEILTTRGKIRITVLFR
PEAHRIRARFELGSRRHRYPGYHIRPIQN
>FGENESH:  10   3 exon (s)  41805  -  43027   357 aa, chain -
MTPKTKRNCRVCFSKVNEYREFGNTDYDSTSSSSGSDMEKKILDTAFIQQPERSSSAESV
ASYSIDSNENSGLCLDVAFLGKPTGSKKRSKKSASKRSHANDSMLAHDGRAEPWTVSPRA
KFPRMSSPKLWATAVRLLKMRAEKRWLAKASERVHRKSTMSQGISWKKPTALKVIRQDWR
FPDEMESEGDNPADNEMAPTSPTKKKKRLLTRRERFIKEVAQRSLKEKKRVEELRRLQFK
EKLSQFIEKVKQGKVVKSIFGQDNEEADENKKFLDFAVKRSSFVKENKADPKKVDFKVRA
GINRRLKSHTIGGEVRLAYEIVLENYDSALGLHFTYLFLHKKDKRFLELEKMFLLNY


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