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Genome Analysis: A Laboratory Manual Series Volume 1, Analyzing DNA
CHAPTER 7, Computational Analysis of DNA and Protein Sequences

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Gish W, States DJ (1993): Identification of protein coding regions by database similarity search.
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Henikoff S, Henikoff JG (1993): Performance evaluation of amino acid substitution matrices.
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Kinzler KW, Nilbert MC, Su LK, Vogelstein B, Bryan TM, Levy DB, Smith KJ, Preisinger AC, Hedge P, McKechnie D, Finniear R, Markham A, Groffen J, Boguski MS, Altschul SF, Horii AK, Ando H, Miyoshi Y, Miki Y, Nishisho I, Nakamura Y (1991): Identification of FAP locus genes from chromosome 5q21.
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Madej T, Boguski MS, Bryant SH (1995): Threading analysis suggests that the obese gene product may be a helical cytokine.
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Meitinger T, Meindl A, Bork P, Rost B, Sander C, Haasemann M, Murken J (1993): Molecular modelling of the Norrie disease protein predicts a cystine knot growth factor tertiary structure.
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Miki Y, Swensen J, Shattuck ED, Futreal PA, Harshman K, Tavtigian S, Liu Q, Cochran C, Bennett LM, Ding W, Bell R, Rosenthal J, Hussey C, Tran T, McClure M, Frye C, Hattier T, Phelps R, Haugen-Strano A, Katcher H, Yakumo K (1994): A strong candidate for the breast and ovarian cancer susceptibility gene BRCA1.
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Papadopoulos N, Nicolaides NC, Wei YF, Ruben SM, Carter KC, Rosen CA, Haseltine WA, Fleischmann RD, Fraser CM, Adams MD, Venter JC, Hamilton SR, Peterson GM, Watson P, Lynch HT, Peltomaki P, Mecklin J-P, de la Chapelle A, Kinzler KW, Vogelstein B (1994): Mutation of a mutL homolog in hereditary colon cancer.
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Su LK, Johnson KA, Smith KJ, Hill DE, Vogelstein B,Kinzler KW (1993): Association between wild type and mutant APC gene products.
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Tatusov RL, Altschul SF, Koonin EV (1994): Detection of conserved segments in proteins: Iterative scanning of sequence databases with alignment blocks.
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Tugendreich S, Boguski MS, Seldin MS, Hieter P (1993): Linking Yeast Genetics to Mammalian Genomes: Identification and Mapping of the Human Homolog of CDC27 via the Expressed Sequence Tag (EST) Data Base.
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