Dr. Ron Kaufmann |
Office: Shiley Center 274; x5904; kaufmann@sandiego.edu or rkaufmann@gmail.com |
Office Hours: Monday 12:30-1:30, Tuesday 2:30-5:00, Friday 12:30-2:00, or by appointment |
Preceptorial Assistant: Bette Webster; elizabethwebster@sandiego.edu |
WEEK | TOPICS | LECTURES | CHAPTERS |
Sep 6 | Introduction, Biological Systems | Sep 6 | 1 |
Sep 11 Sep 13 |
Evolution,
Scientific Method
Characteristics of Living Organisms* |
1
5 |
|
Sep 18 Sep 20 |
Early Earth,
Origins of Life
History of Evolutionary Thought |
25 22 Miller SOM |
|
Sep 25 Sep 27 |
Evolutionary Theory Cell Cycle, Mitosis |
22
12 |
|
Oct
2 |
Cell
Cycle, Meiosis
Principles of Inheritance |
13 14 |
|
Oct 9 |
Midterm
Exam #1
Mendelian Genetics |
1, 5,
12, 13, 14, 22, 25
14, 15 |
|
Oct 16 Oct 18 |
Linkage,
Recombination Population Genetics Problem Sets #1 #2 #3 |
15
23 |
|
Oct 23 Oct 25 |
Examining Variation |
|
Assignment |
Oct 30 Nov 1 |
Microevolution Describing Variation |
23
|
|
Nov 6 Nov 8 |
Macroevolution Macroevolution |
24 24 |
|
Nov 13 Nov 15 |
Midterm
Exam #2
Systematics |
14,
15, 23, 24 26 |
|
Nov 20 Nov 22 |
Scientific Literature Thanksgiving - No Class |
Nov 20 | |
Nov 27 Nov 29 |
Introduction to
Ecology
Population Ecology |
52 53; Assignment |
|
Dec 4 Dec 6 |
Population Ecology Population Ecology |
53 53 |
|
Dec 11 Dec 13 |
Community Ecology Community Ecology |
54
54 |
FINAL EXAM Tuesday, December 18, 11:00-1:00 Review Sheet
Text: Campbell Biology, Ninth Edition, Reece, Urry, Cain, Wasserman, Minorsky and Jackson
*Visit from Amy Besnoy, Science Librarian, Copley Library
Additional, required readings may be assigned during the semester.
Grades
Midterm Exams (2) |
100 points
|
each |
Final Exam (non-cumulative portion) |
100 points
|
|
Final Exam (cumulative portion) |
50 points
|
|
Homework |
50 points
|
|
Participation, LLC events, SSW's |
100 points
|
|
TOTAL |
500 points
|
Course Objectives
The goal of this course is to
introduce
you to the basic principles and processes of genetics, ecology and
evolutionary
biology. For each topic we cover I will try to present you with
the
underlying theory as well as relevant terminology and specific examples
that illustrate each theory. Many of the topics treated in this course
relate directly to areas of current concern, including genetic
engineering,
human cloning, habitat degradation and loss, declining biodiversity,
the
discovery of new and important fossil species, and the ecological
effects
of climate change. These issues are covered regularly by the
media,
and it is my hope that you will encounter stories that connect to the
material
we cover during the semester. If you encounter an interesting
story
that connects well to the course material, I hope you'll share that
information
with the rest of the class.
This course covers a lot of information, which can pile up quickly if you’re not careful. If you attend lectures, follow the book, and pay attention in lecture, you should be able to keep up. I expect that this class will be challenging; I hope you also find it to be interesting and fun. If you are having trouble or are concerned about your performance in this course, please contact me as soon as possible. I will try my best to answer your questions and help you succeed. Besides coming to my office hours, the best way to reach me is by e-mail.
Learning Outcomes
After taking this course, you should be able
to
Describe the role of evolution in giving rise to the diversity of organisms.
Explain how interactions of organisms with the biotic and abiotic environment can influence natural selection.
Explain how natural selection leads to adaptation.
Relate changes in DNA and gene expression to changes in the structure and function of organisms.
Solve basic Mendelian genetic and Hardy-Weinberg problems.
Articulate how knowledge is acquired, evaluated and communicated in science.
Exams
There will be NO
make-up exams in this course without prior approval from the
instructor (me).
This means that if you give me enough advance notice and there is a
compelling
reason why you must miss a scheduled exam we can probably work
something
out. If you wait until the last minute before telling me that you
can't make it to an exam I'm likely to be much less forgiving.
Travel
plans do NOT constitute a valid
excuse
for missing ANY exam. If there
is an
emergency that prevents you from taking an exam, please contact me PRIOR to the exam
time.
This policy includes the final exam.
Homework
This class will include two graded
homework assignments, each consisting of a set of problems designed to
help you
solidify your understanding of genetics and inheritance. The
assignments
will cover some material for the second midterm; both will be returned
to you with grades and comments before the second exam.
Participation
Class attendance and participation
are important components of the learning experience. As a
university student you are responsible for your own attendance and
conduct. I will not take attendance in class. However, if
you do not show up regularly or if you consistently arrive late, your
final grade may suffer as a result. Participation in class
includes asking questions, being involved in discussions, and generally
behaving like a real, live, interested, person. If you tend to be
shy by nature, don’t worry: I don’t expect each of you to ask three
questions every day (that would be 60 questions a day!).
However, if you go the entire semester without ever uttering a word in
class, you aren’t trying hard enough. If I go over material too
rapidly
or too slowly, or if I explain something that doesn’t make sense or
that
you don’t understand, please raise
your hand and bring the problem to my attention.
Student Success
Workshops
The SSW
program consists of 25+ sessions designed to assist you with your
transition to college. Sessions cover a wide range of topics,
including academic, social, and personal issues. As part of this
course, you each will be required to attend a minimum of three
sessions during the course of the semester. For each session
you attend, please write a one-page summary (hard copy or by e-mail as
an attached Word document or pdf) of each session, including (1) a brief
description of the subject covered, (2) a brief critique of the
session itself (possibly including organization, coverage, atmosphere,
usefulness, etc.), and (3) how you feel the session connected to you
personally. Some reflection questions to help you with your summaries can
be found at the
SSW
web
site. Each summary will be due within one week of the session on which
it is based. These summaries don't have to be literary masterpieces, but
they should contain the results of thought and insight on your part about the
session and topic. A schedule of sessions will be available to you at the
beginning of the semester and can be found on the
SSW
session web
site. You are required to attend at least one session by October 5 and another by
November 5.
Living-Learning Community (LLC)
Your preceptorial class
is part of the Sustainability Living-Learning Community, which includes seven
preceptorials from different disciplines: Biology, Engineering, Environmental
Studies, History, Philosophy, Political Science and Theology & Religious
Studies. The uniting theme among all of these classes is sustainability, the
ability to meet the needs of the present without compromising the ability to
meet the needs of the future (this is one definition among many). Although each
of these classes will cover very different topics, students from all of the
classes will share a dorm and participate in various LLC events. These will be
announced in class and posted on the
Sustainability LLC web
site. You are expected to attend two major events that involve the
entire LLC
Sep 14 (Fri): 6-8:30 pm, Sustainability Dinner, La Gran Terraza
Sep 22 (Sat): 8 am - 2 pm, Beach Blowout, Mission Point Park
as well as one event related to your preceptorial class
Sep 29 (Sat): 8 am - 2 pm, Hike in Elfin Forest Recreational Reserve
In addition, you may want (and be encouraged) to attend additional LLC events throughout the semester. Most of these events are intended to be experiential and won't be graded. The main point is for you to participate and learn. We will have a discussion in class after the Elfin Forest hike, primarily to talk about your impression in relation to the themes of our class (evolution) and LLC (sustainability).
Extra Credit
In addition to the 500 "mandatory" points, it
will be possible to earn up to 25 extra credit points by successfully completing
an additional assignment. Select an article on a current topic not covered
in class but related to the course content. After having the article
approved by me, you should research the topic and write a 4-6 page paper
covering the subject. This should be written as a research paper,
including a reference list and either reference citations in the text or
footnotes. You may find some information on the internet, but don't use
web sites exclusively as your references. Completion of an extra credit
paper is not sufficient to earn 25 points, and substandard assignments will earn
fewer extra credit points. Extra credit papers may be handed in until
11:59 pm on Sunday, December 9. Papers received after that time will not be
accepted.
Academic Integrity
The use of information from
published
sources can create some confusion about proper use and referencing of
material
that you did not generate yourself. Here are some guidelines to
help
you use but not misuse information produced by others. The only
substantial
writing you are likely to do for this class is an extra credit paper,
and
the academic integrity concept applies to that paper just as it would
to
a more substantial paper for any class. For writing assignments
in
general, it is expected that you will read publications and incorporate
into your papers some of the findings and ideas contained in those
published
works. When you refer to information generated by someone else,
it
is important to credit the source of that information. Commonly,
that credit comes in the form of a parenthetical citation. For
example:
Global climate change has been implicated in the decline of zooplankton biomass in the eastern Pacific during the second half of the 20th century (Roemmich and McGowan, 1995).This sentence contains a conclusion described by Roemmich and McGowan in a paper published in 1995. It could be appropriate for you to include a sentence like this in one of your papers, but since you didn’t perform the research that led to this conclusion you need to cite the people who did.
This page and all contents copyright
2005-2012 by
Ron Kaufmann
All rights reserved
Last modified 30 Nov 2012 by Ron
Kaufmann