Include within your ELN the full PDF results from FGENESH (C. elegans version), and from the BLASTX analysis, the screenshot of the 'Graphic Summary' as noted in the instructions.
Include the summary information below, and then create a simple table of your results, titled and with any appropriate notes as shown below:
FGENESH analysis results for Omy_Node_15a.seq (O. myriophila genomic DNA) - Predicted Genes, Organism setting C. elegans:
Omy_NODE_15a Gene prediction using FGENESH 2.6
Number of predicted genes 11: in +chain 4, in -chain 7.
Number of predicted exons 49: in +chain 21, in -chain 28.
Gene density (ab intio analysis): average ~1 gene / 4530 bp DNA (length of analyzed sequence: 49820)
| Gene | Strand | Exons (n) | Protein length (AAs) | BLASTX match? | BLASTP match? |
| 1 | + | 9 | 379 | yes | yes |
| 2 | + | 13 | 465 | yes | yes |
| 3 | - | 2 | 48 | no | no |
| 4 | + | 6 | 798 | yes | yes |
| 5 | - | 1 | 37 | no | no |
| 6 | etc. | ||||
| * | - | 2 | 45? | yes | not done |
*Notes: One possible gene found by BLASTX was not detected by FGENESH, between predicted genes 4 & 5.
Predicted Genes, Organism setting Pristionchus pacificus:
Omy_NODE_15a Gene prediction using FGENESH 2.6
Number of predicted genes 10: in +chain 4, in -chain 6.
Number of predicted exons 40: in +chain 17, in -chain 23.
Did you get done fast? Extra credit - Predicted genes possible functions